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References

  • 1. Desmond Adler, Tony Ko, Paul Herz, and James Fujimoto. Optical coherence tomography contrast enhancement using spectroscopic analysis with spectral autocorrelation. Optics express, 12(22):5487-5501, 2004.
  • 2. Danni Ai, Xianhua Han, Xiang Ruan, and Yen-Wei Chen. Adaptive color independent components based sift descriptors for image classification. In Proceedings of the 2010 20th International Conference on Pattern Recognition, pages 2436-2439. IEEE Computer Society, 2010.
  • 3. Maria E Akerman, Warren CW Chan, Pirjo Laakkonen, SangeetaN Bhatia, and Erkki Ruoslahti. Nanocrystal targeting in vivo. Proceedings of the National Academy of Sciences, 99(20):12617- 12621, 2002.
  • 4. A Paul Alivisatos, Weiwei Gu, and Carolyn Larabell. Quantum dots as cellular probes. Annu. Rev. Biomed. Eng., 7:55-76, 2005.
  • 5. Roohollah Bagherzadeh, Masoud Latifi, Saeed Shaikhzadeh Najar, and Lingxue Kong. The application of cd se/zns quantum dots and confocal laser scanning microscopy for threedimensional imaging of nanofibrous structures. Journal of industrial textiles, 43(4):496-510, 2014.
  • 6. Byron Ballou, B Christoffer Lagerholm, Lauren A Ernst, Marcel P Bruchez, and Alan S Waggoner. Noninvasive imaging of quantum dots in mice. Bioconjugate chemistry, 15(1):79-86, 2004.
  • 7. Marcel Bruchez, Mario Moronne, Peter Gin, Shimon Weiss, and A Paul Alivisatos. Semiconductor nanocrystals as fluorescent biological labels. science, 281(5385):2013-2016, 1998.
  • 8. Victoria E Centonze. Introduction to multiphoton excitation imaging for the biological sciences. Cell Biological Applications of Confocal Microscopy, page 129, 2002.
  • 9. Warren CW Chan and Shuming Nie. Quantum dot bioconjugates for ultrasensitive nonisotopic detection. Science, 281(5385):2016-2018, 1998.
  • 10. Leonardo Chang, Miriam M Duarte, Luis Enrique Sucar, and Eduardo F Morales. A Bayesian approach for object classification based on clusters of sift local features. Expert Systems With Applications, 39(2):1679-1686, 2012.
  • 11. Jui-Tai Chen, Ruei-Ming Chen, Yi-Ling Lin, Huai-Chia Chang, Yu-Hua Lin, Ta-Liang Chen, and Tyng-Guey Chen. Confocal laser scanning microscopy: 1. an overview of principle and practice in biomedical research. ACTA ANAESTHESIOLOGICA SINICA, 42:33-40, 2004.
  • 12. Thomas M Cover and Peter E Hart. Nearest neighbor pattern classification. Information Theory, IEEE Transactions on, 13(1):21-27, 1967.
  • 13. Maxime Dahan, Sabine Levi, Camilla Luccardini, Philippe Rostaing, Beatrice Riveau, and Antoine Triller. Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking. Science, 302(5644):442-445, 2003.
  • 14. Frank De Lange, Alessandra Cambi, Richard Huijbens, Barbel de Bakker, Wouter Rensen, Maria Garcia-Parajo, Niek van Hulst, and Carl G Figdor. Cell biology beyond the diffraction limit: near-field scanning optical microscopy. Journal of cell science, 114(23):4153-4160, 2001.
  • 15. Winfried Denk. Principles of multiphoton-excitation fluorescence microscopy. Cold Spring Harbor Protocols, 2007(10):pdb-top23, 2007.
  • 16. Sulatha Dwarakanath, John G Bruno, Anant Shastry, Taylor Phillips, Ashely John, Ashok Kumar, and Larry D Stephenson. Quantum dot-antibody and aptamer conjugates shift fluorescence upon binding bacteria. Biochemical and biophysical research communications, 325(3):739-743, 2004.
  • 17. Michael Edidin. Near-field scanning optical microscopy, a siren call to biology. Traffic, 2(11):797-803, 2001.
  • 18. Justin Farlow, Daeha Seo, Kyle E Broaders, Marcus J Taylor, Zev J Gartner, and Young-wook Jun. Formation of targeted monovalent quantum dots by steric exclusion. Nature methods, 10(12):1203-1205, 2013.
  • 19. MD Fricker and AJ Meyer. Confocal imaging of metabolism in vivo: pitfalls and possibilities. Journal of experimental botany, 52(356):631-640, 2001.
  • 20. JM Girkin. Optical physics enables advances in multiphoton imaging. Journal of Physics D: Applied Physics, 36(14):R250, 2003.
  • 21. Ralph Graf, Jens Rietdorf, and Timo Zimmermann. Live cell spinning disk microscopy. In Microscopy Techniques, pages 57-75. Springer, 2005.
  • 22. Weiwei Gu, Teresa Pellegrino, Wolfgang J Parak, Rosanne Boudreau, Mark A Le Gros, Daniele Gerion, A Paul Alivisatos, and Carolyn A Larabell. Quantum dot-based cell motility assay. Science Signaling, 2005(290):pl5-pl5, 2005.
  • 23. Karl-Jurgen Halbhuber and Karsten Konig. Modern laser scanning microscopy in biology, biotechnology and medicine. Annals of Anatomy-Anatomischer Anzeiger, 185(1):1-20, 2003.
  • 24. Alan R Hibbs. Confocal microscopy for biologists. Springer Science & Business Media, 2004.
  • 25. Barbara M Hoeling, Andrew D Fernandez, Richard C Haskell, Eric Huang, Whittier R Myers, Daniel C Petersen, Sharon E Ungersma, Ruye Wang, Mary E Williams, and Scott E Fraser. An optical coherence microscope for 3-dimensional imaging in developmental biology. Optics Express, 6(7):136-146, 2000.
  • 26. Benoit Host, Laure Twyffels, Yves Roisin, and J-M Vanderwinden. Three-dimensional visualization of termite (apicotermitinae) enteric valve using confocal laser scanning microscopy. Journal of microscopy, 255(2):116-122, 2014.
  • 27. Mark Howarth, Wenhao Liu, Sujiet Puthenveetil, Yi Zheng, Lisa F Marshall, Michael M Schmidt, K Dane Wittrup, Moungi G Bawendi, and Alice Y Ting. Monovalent, reduced-size quantum dots for imaging receptors on living cells. Nature methods, 5(5):397-399, 2008.
  • 28. Anatoli Ianoul, Melissa Street, Donna Grant, John Pezacki, Rod S Taylor, and Linda J Johnston. Near-field scanning fluorescence microscopy study of ion channel clusters in cardiac myocyte membranes. Biophysical journal, 87(5):3525-3535, 2004.
  • 29. Marjolein Koopman, Alessandra Cambi, Barbel I de Bakker, Ben Joosten, Carl G Figdor, Niek F van Hulst, and Maria F Garcia-Parajo. Near-field scanning optical microscopy in liquid for high resolution single molecule detection on dendritic cells. FEBS letters, 573(1-3):6-10, 2004.
  • 30. Blandine Laude, Antonello De Martino, Bernard Drevillon, Laurence Benattar, and Laurent Schwartz. Full-field optical coherence tomography with thermal light. Applied optics, 41(31):6637-6645, 2002.
  • 31. Tony Lindeberg. Scale-space theory: A basic tool for analyzing structures at different scales. Journal of applied statistics, 21(1-2):225-270, 1994.
  • 32. D.G. Lowe. Distinctive image features from scale-invariant keypoints. Int. J. Comput. Vis., 60(2):91-110, 2004.
  • 33. John N Mason, Ian D Tomlinson, Sandra J Rosenthal, and Randy D Blakely. Labeling cell-surface proteins via antibody quantum dot streptavidin conjugates. Methods Mol Biol, 303(1):35-50, 2005.
  • 34. Sean G Megason and Scott E Fraser. Digitizing life at the level of the cell: high-performance laser-scanning microscopy and image analysis for in toto imaging of development. Mechanisms of development, 120(11):1407-1420, 2003.
  • 35. Xavier Michalet, Fabien Pinaud, Thilo D Lacoste, Maxime Dahan, Marcel P Bruchez, A Paul Alivisatos, and Shimon Weiss. Properties of fluorescent semiconductor nanocrystals and their application to biological labeling. Single Molecules, 2(4):261-276, 2001.
  • 36. Peter Mitchell. Turning the spotlight on cellular imaging. Nature biotechnology, 19(11):1013- 1018,2001.
  • 37. Toshiyuki Miyashita. Confocal microscopy for intracellular co-localization of proteins. Protein-Protein Interactions: Methods and Applications, pages 399-409, 2004.
  • 38. Christof M Niemeyer. Functional hybrid devices of proteins and inorganic nanoparticles. Ange- wandte Chemie International Edition, 42(47):5796-5800, 2003.
  • 39. Timo Ojala, Matti Pietikainen, and David Harwood. A comparative study of texture measures with classification based on featured distributions. Pattern recognition, 29(1):51-59, 1996.
  • 40. Timo Ojala, Matti Pietikainen, and Topi Maenpaa. Multiresolution gray-scale and rotation invariant texture classification with local binary patterns. Pattern Analysis and Machine Intelligence, IEEE Transactions on, 24(7):971-987, 2002.
  • 41. Aydogan Ozcan, Ertugrul Cubukcu, Alberto Bilenca, Kenneth B Crozier, Brett E Bouma, Federico Capasso, and Guillermo J Tearney. Differential near-field scanning optical microscopy. Nano letters, 6(11):2609-2616, 2006.
  • 42. Stephen W Paddock. Principles and practices of laser scanning confocal microscopy. Molecular biotechnology, 16(2):127-149, 2000.
  • 43. Jeremy S Paige, ThinhNguyen-Duc, Wenjiao Song, and SamieR Jaffrey. Fluorescence imaging of cellular metabolites with rna. Science, 335(6073):1194-1194, 2012.
  • 44. Matti Pietikainen, Abdenour Hadid, Guoying Zhao, and Timo Ahonen. Local binary patterns for still images. In Computer Vision Using Local Binary Patterns, pages 13-47. Springer, 2011.
  • 45. David W Piston. Imaging living cells and tissues by two-photon excitation microscopy. Trends in cell biology, 9(2):66-69, 1999.
  • 46. K Reynaud, D Nogueira, R Cortvrindt, R Kurzawa, and J Smitz. Confocal microscopy: principles and applications to the field of reproductive biology. Folia histochemica et cytobiolog- ica/Polish Academy of Sciences, Polish Histochemical and Cytochemical Society, 39(2):75-85, 2000.
  • 47. Ryan Rifkin and Aldebaro Klautau. In defense of one-vs-all classification. Mach. Learn. Res., 5:101-141,2004.
  • 48. Andrew Rollins, Siavash Yazdanfar, Manish Kulkarni, Rujchai Ung-Arunyawee, and Joseph Izatt. In vivo video rate optical coherence tomography. Optics Express, 3(6):219-229, 1998.
  • 49. Sandra J Rosenthal. Bar-coding biomolecules with fluorescent nanocrystals. Nature biotechnology, 19(7):621-622, 2001.
  • 50. Eleonora Ruocco, Giuseppe Argenziano, Giovanni Pellacani, and Stefania Seidenari. Noninvasive imaging of skin tumors. Dermatologic surgery, 30(s2):301-310, 2004.
  • 51. Paul Selvin. New small quantum dots for neuroscience (presentation video). In SPIE BiOS, pages 89282X-89282X. International Society for Optics and Photonics, 2014.
  • 52. Caroline Seydel. Quantum dots get wet. Science, 300(5616):80, 2003.
  • 53. Andrei P Sommer and Ralf-Peter Franke. Near-field optical analysis of living cells in vitro. Journal of proteome research, 1(2):111-114, 2002.
  • 54. AP Sommer and R-P Franke. Hydrophobic optical elements for near-field optical analysis (noa) in liquid environment—a preliminary study. Micron, 33(3):227-231, 2002.
  • 55. Martin Straub and Stefan W Hell. Multifocal multiphoton microscopy: a fast and efficient tool for 3-d fluorescence imaging. Bioimaging, 6(4):177-185, 1998.
  • 56. Mitsuro Sugita, Michael Pircher, Stefan Zotter, Bernhard Baumann, Kenichi Saito, Tomoyuki Makihira, Nobuhiro Tomatsu, Makoto Sato, and Christoph K Hitzenberger. Analysis of optimum conditions of depolarization imaging by polarization-sensitive optical coherence tomography in the human retina. Journal of biomedical optics, 20(1):016011-016011, 2015.
  • 57. DJ Taatjes, CJ Palmer, C Pantano, S Buder-Hoffmann, A Cummins, and BT Mossman. Laser- based microscopic approaches: application to cell signaling in environmental lung disease. Biotechniques, 31(4):880-895, 2001.
  • 58. Wee Beng Tan and Yong Zhang. Surface modification of gold and quantum dot nanoparticles with chitosan for bioapplications. Journal of biomedical materials research Part A, 75(1):56- 62, 2005.
  • 59. Fuyuki Tokumasu, Rick M Fairhurst, Graciela R Ostera, Nathaniel J Brittain, Jeeseong Hwang, Thomas E Wellems, and James A Dvorak. Band 3 modifications in plasmodium falciparum- infected aa and cc erythrocytes assayed by autocorrelation analysis using quantum dots. Journal of cell science, 118(5):1091-1098, 2005.
  • 60. Pavel Vesely and Alan Boyde. Fast intracellular motion in the living cell by video rate reflection confocal laser scanning microscopy. Journal of anatomy, 198(6):641-649, 2001.
  • 61. Tie Xia, Nan Li, and Xiaohong Fang. Single-molecule fluorescence imaging in living cells. Annual review of physical chemistry, 64:459-480, 2013.
  • 62. Xiang Xu, Feng Lin, Carol Ng, and Khai Pang Leong. Staining pattern classification of ana- iif based on sift features. Journal of Medical Imaging and Health Informatics, 2(4):419-424, 2012.
  • 63. Dvir Yelin and Yaron Silberberg. Laser scanning third-harmonic-generation microscopy in biology. Optics express, 5(8):169—175, 1999.
  • 64. Huiyu Zhou, Yuan Yuan, and Chunmei Shi. Object tracking using sift features and mean shift. Computer vision and image understanding, 113(3):345-352, 2009.
 
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